Stem-loop sequence osa-MIR1882d

Accession MI0008291
Description Oryza sativa miR1882d stem-loop
Gene family MIPF0000571; MIR1882
Stem-loop 
u     cg   c   ua           u              u     a     -c         a  u     u   a 
 guuau  uua caa  uccuagauugc uucaaggucauuuc uuagg aaccc  auucccaua au cagua cca a
 |||||  ||| |||  ||||||||||| |||||||||||||| ||||| |||||  ||||||||| || ||||| |||  
 caaua  agu guu  aggaucuaacg agguucuaguaaag aaucc uuggg  uaaggguau ua guugu ggu g
-     au   c   ug           c              c     c     aa         c  u     u   a
Get sequence
Deep sequencing
56 reads, 4 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr8: 18739319-18739478 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR1882d
osa-MIR818f Chr8: 18746588-18746866 [-]
osa-MIR1882d Chr8: 18739319-18739478 [-]

Mature sequence osa-miR1882d

Accession MIMAT0007842
Sequence

22 -  

agauugcuuucaaggucauuucuu

 - 45

Get sequence
Deep sequencing 7 reads, 2 experiments
Evidence experimental; 454 [1]

References

1
PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).