Stem-loop sequence osa-MIR1865

Accession

MI0008266 (change log)

Description

Oryza sativa miR1865 stem-loop

Literature search

4 open access papers mention osa-MIR1865
(4 sentences)

Stem-loop

   --c     c   u         g              ca  a  c       u ug    ---        -  g 
5'    ucgaa uac gcuagugau gugauucuucgaca  gu uu ggcgagu u  ggcu   ucaucaug cg u
      ||||| ||| ||||||||| ||||||||||||||  || || ||||||| |  ||||   |||||||| || g
3'    aguuu aug ugaucacug cgcuaagaagcugu  ca aa ccguuca a  ccga   agugguac gc c
   cuc     a   u         a              --  g  a       - gu    agc        a  u 

Deep sequencing

44 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr3: 34000594-34000737 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1865

• osa-MIR1865: Chr3: 34000594-34000737 [+]
• osa-MIR5513: Chr3: 34008003-34008148 [+]

Database links

• miRBase Tracker:MI0008266

Mature sequence osa-miR1865-5p

• Accession: MIMAT0007815
• Sequence: 11 - ugcuagugauggugauucuucgac - 34
• Deep sequencing: 40 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000044BADA_39947

Mature sequence osa-miR1865-3p

• Accession: MIMAT0007816
• Sequence: 111 - cgaagaaucgcagucacuaguugu - 134
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00003D65B6_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).