Stem-loop sequence osa-MIR1862b

Accession

MI0008262 (change log)

Description

Oryza sativa miR1862b stem-loop

Gene family

MIPF0000344; MIR818

Literature search

11 open access papers mention osa-MIR1862b
(14 sentences)

Stem-loop

         uu     gaacau  -uu     c  -   g  ua       a                    ua   aa   u         a     ---   cg 
5' ggucau  agaua      gu   caucu ag ugc cc  cucccuu gucccaaaauaaauuaaucu  uac  gau uggcacauc uagua   cua  a
   ||||||  |||||      ||   ||||| || ||| ||  ||||||| ||||||||||||||||||||  |||  ||| ||||||||| |||||   |||   
3' ccagua  ucuau      ca   guagg uc aug gg  gagggag caggguuuuauuugguugga  aug  uua acuguguag aucau   ggu  a
         -c     -gacgc  ucc     c  u   a  --       g                    gc   cc   c         g     aua   cu 

Deep sequencing

2674 reads, 1.1e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr8: 8341200-8341398 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008262

Mature sequence osa-miR1862b

• Accession: MIMAT0007811
• Sequence: 132 - acgagguugguuuauuuugggacg - 155
• Deep sequencing: 2327 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00000FD01F_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).