Stem-loop sequence osa-MIR1861n

Accession

MI0008260 (change log)

Description

Oryza sativa miR1861n stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

8 open access papers mention osa-MIR1861n
(47 sentences)

Stem-loop

   --    g          u     c        u           a     u      cuc  uuu 
5'   gcgu uuguauauuc uaggc cgaucuug ggcaggagcug guagc ggugaa   gc   a
     |||| |||||||||| ||||| |||||||| ||||||||||| ||||| ||||||   ||    
3'   ugua aacguauaag gucug gcuagaac cuguccuuggc caucg ucacuu   ug   u
   ag    -          u     a        c           a     c      acu  uug 

Deep sequencing

7 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr12: 16586544-16586672 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008260

Mature sequence osa-miR1861n

• Accession: MIMAT0007809
• Sequence: 23 - cgaucuuguggcaggagcugag - 44
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).