Stem-loop sequence osa-MIR1861k

Accession

MI0008257 (change log)

Description

Oryza sativa miR1861k stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

8 open access papers mention osa-MIR1861k
(48 sentences)

Stem-loop

           u     c                    a     uc u 
5' gcauauuc uaggc cggucuuguggcaagaacug guagu  g u
   |||||||| ||||| |||||||||||||||||||| |||||  |  
3' cguauaag gucug gccagaacacuguucuuggc caucg  c a
           u     a                    g     cu a 

Deep sequencing

11 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr8: 15132529-15132620 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1861k

• osa-MIR1861j: Chr8: 15132727-15132836 [-]
• osa-MIR1861k: Chr8: 15132529-15132620 [-]

Database links

• miRBase Tracker:MI0008257

Mature sequence osa-miR1861k

• Accession: MIMAT0007806
• Sequence: 16 - cggucuuguggcaagaacugag - 37
• Deep sequencing: 9 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS0000470D1F_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).