Stem-loop sequence osa-MIR1861j

Accession

MI0008256 (change log)

Description

Oryza sativa miR1861j stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

9 open access papers mention osa-MIR1861j
(49 sentences)

Stem-loop

         u     cc       a           a  a  u       uc  ucu 
5' auauuc uaggc  ggucuug ggcaggaacug gu gu ggugaac  gc   a
   |||||| |||||  ||||||| ||||||||||| || || |||||||  ||    
3' uauaag gucug  ucggaac cuguccuugac ca cg ucacuug  ug   u
         u     aa       c           a  g  c       cu  uug 

Deep sequencing

242 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr8: 15132727-15132836 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1861j

• osa-MIR1861j: Chr8: 15132727-15132836 [-]
• osa-MIR1861k: Chr8: 15132529-15132620 [-]

Database links

• miRBase Tracker:MI0008256

Mature sequence osa-miR1861j

• Accession: MIMAT0007805
• Sequence: 14 - cggucuugaggcaggaacugag - 35
• Deep sequencing: 242 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000048AE79_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).