Stem-loop sequence osa-MIR1861g

Accession

MI0008253 (change log)

Description

Oryza sativa miR1861g stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

8 open access papers mention osa-MIR1861g
(47 sentences)

Stem-loop

   -   ug          u     c a                 ga     uc u 
5'  cgg  uugcauauuc uaggc c gucuuguggcaagaacu  guagu  g u
    |||  |||||||||| ||||| | |||||||||||||||||  |||||  |  
3'  guu  aacguauaag guccg g uagaacacuguucuugg  caucg  c a
   g   ga          u     a c                 ug     cu a 

Deep sequencing

10 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr5: 18668611-18668717 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1861g

• osa-MIR1861f: Chr5: 18668398-18668513 [+]
• osa-MIR1861g: Chr5: 18668611-18668717 [+]

Database links

• miRBase Tracker:MI0008253

Mature sequence osa-miR1861g

• Accession: MIMAT0007802
• Sequence: 23 - cagucuuguggcaagaacugag - 44
• Deep sequencing: 9 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00002E6AE7_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).