Stem-loop sequence osa-MIR1861f

Accession

MI0008252 (change log)

Description

Oryza sativa miR1861f stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

8 open access papers mention osa-MIR1861f
(47 sentences)

Stem-loop

   u cg     u     c        a                 u u     uu  ucu 
5'  g  uauuc uaggc cgaucuug ggcaggaacugaguagu g ugaac  gc   a
    |  ||||| ||||| |||||||| ||||||||||||||||| | |||||  ||    
3'  c  auaag aucug gcuagaac cuguccuuggcuuauca c acuug  ug   u
   a au     u     a        c                 c c     cu  uug 

Deep sequencing

191 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr5: 18668398-18668513 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1861f

• osa-MIR1861f: Chr5: 18668398-18668513 [+]
• osa-MIR1861g: Chr5: 18668611-18668717 [+]

Database links

• miRBase Tracker:MI0008252

Mature sequence osa-miR1861f

• Accession: MIMAT0007801
• Sequence: 17 - cgaucuugaggcaggaacugag - 38
• Deep sequencing: 186 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00001FBCD0_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).