Stem-loop sequence osa-MIR1847

Accession

MI0008224 (change log)

Description

Oryza sativa miR1847 stem-loop

Literature search

5 open access papers mention osa-MIR1847
(5 sentences)

Stem-loop

      cu    a        c                        a         c 
5' aga  cccu acuuugug aguuugcaguuguggcacugacau ugggccaga a
   |||  |||| |||||||| |||||||||||||||||||||||| |||||||||  
3' ucu  ggga ugaaauac ucaaacgucaacaccgugauugua acccgguuu c
      ag    c        a                        c         a 

Deep sequencing

31 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 20332878-20332987 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008224

Mature sequence osa-miR1847.1

• Accession: MIMAT0007766
• Sequence: 17 - ugcaguuugcaguuguggcac - 37
• Deep sequencing: 12 reads, 2 experiments
• Evidence: experimental; 454 [1]

Mature sequence osa-miR1847.2

• Accession: MIMAT0007767
• Sequence: 60 - uggcccacauguuagugccacaac - 83
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).