Stem-loop sequence ssc-mir-16-1

AccessionMI0008213 (change log)
Previous IDsssc-mir-16-2
DescriptionSus scrofa miR-16-1 stem-loop
Gene family MIPF0000006; mir-15
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-16_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-16 microRNA precursor family is a group of related small non-coding RNA genes that regulates gene expression. miR-16, miR-15, mir-195 and miR-457 are related microRNA precursor sequences from the mir-15 gene family. This microRNA family appears to be vertebrate specific and its members have been predicted or experimentally validated in a wide range of vertebrate species (MIPF0000006).

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   uc    cu         ua        c  --    aa 
5'   cgcu  agcagcacg  aauauugg gu  agua  a
     ||||  |||||||||  |||||||| ||  ||||  u
3'   gcga  ucgucgugu  uuauaacc ca  uuau  a
   gu    uu         ua        a  aa    aa 
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr13: 108388290-108388366 [+]
ENSSSCT00000012842 ; SMC4-201; intron 5
Clustered miRNAs
< 10kb from ssc-mir-16-1
ssc-mir-15bchr13: 108388133-108388230 [+]
ssc-mir-16-1chr13: 108388290-108388366 [+]
Database links

Mature sequence ssc-miR-16

Accession MIMAT0007754

8 - 


 - 29

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Evidence experimental; cloned [1,3], Illumina [2,4-5]


PMID:18548309 "Identification and characterization of new microRNAs from pig" Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS Mamm Genome. 19:570-580(2008).
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).