Stem-loop sequence cel-mir-1832a

Accession

MI0008202 (change log)

Previous IDs

cel-mir-1832

Description

Caenorhabditis elegans miR-1832 stem-loop

Stem-loop

   --  g       aa           --g  -  u 
5'   ca cgauucg  cuccgcccacu   ca cc g
     || |||||||  |||||||||||   || || a
3'   gu gcuaagc  gaggcggguga   gu gg u
   ua  a       --           aca  u  u 

Deep sequencing

8602 reads, 13.3 reads per million, 15 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIII: 11829248-11829311 [+]
• Overlapping transcripts:

  sense

  C18D11.4a.1 ; C18D11.4a.1; intron 3

  C18D11.4a.2 ; C18D11.4a.2; intron 3

Database links

• RNAcentral:URS00002A7375_6239
• miRBase Tracker:MI0008202

Mature sequence cel-miR-1832a-5p

• Accession: MIMAT0032039
• Sequence: 1 - cagcgauucgaacuccgcccacu - 23
• Deep sequencing: 213 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000769BFD_6239

Mature sequence cel-miR-1832a-3p

• Accession: MIMAT0006774
• Previous IDs: cel-miR-1832a
• Sequence: 44 - ugggcggagcgaaucgaugau - 64
• Deep sequencing: 8228 reads, 15 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS00001405BE_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-1832
  • microrna.org:cel-miR-1832a-3p

References

1. PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).