Stem-loop sequence cfa-mir-409

Accession

MI0008147

Description

Canis familiaris miR-409 stem-loop

Stem-loop

--a    acc        -    - auc 
   gguu   cgagcaac uuug c   u
   ||||   |||||||| |||| |    
   ccaa   gcucguug aagc g   g
ucc    guu        u    a cag 

Genome context

• Coordinates (CanFam2): chr8: 72336515-72336568 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cfa-mir-409

• cfa-mir-485: chr8: 72326972-72327030 [+]
• cfa-mir-496: chr8: 72332143-72332240 [+]
• cfa-mir-377: chr8: 72333670-72333738 [+]
• cfa-mir-409: chr8: 72336515-72336568 [+]
• cfa-mir-369: chr8: 72336806-72336861 [+]
• cfa-mir-410: chr8: 72337110-72337165 [+]

Mature sequence cfa-miR-409

• Accession: MIMAT0006726
• Sequence: 34 - aauguugcucguugaaccccu - 54
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • MIRDB:cfa-miR-409
  • TARGETSCAN-VERT:cfa-miR-409

References

1. PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).