Stem-loop sequence cfa-mir-485

Accession MI0008146
Description Canis familiaris miR-485 stem-loop
Gene family MIPF0000201; mir-485
Stem-loop 
--     cu       -    a    auuc 
  agagg  ggccgug auga uucg    a
  |||||  ||||||| |||| ||||    u
  ucucc  ucggcac uacu gagc    c
uc     uc       a    -    gaaa
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Genome context
Coordinates (CanFam2) Overlapping transcripts
chr8: 72326972-72327030 [+]
sense
antisense
Clustered miRNAs
< 10kb from cfa-mir-485
cfa-mir-381 chr8: 72317716-72317790 [+]
cfa-mir-487b chr8: 72318229-72318286 [+]
cfa-mir-539 chr8: 72319044-72319119 [+]
cfa-mir-544 chr8: 72320389-72320477 [+]
cfa-mir-487a chr8: 72323811-72323890 [+]
cfa-mir-382 chr8: 72325856-72325912 [+]
cfa-mir-134 chr8: 72326229-72326301 [+]
cfa-mir-485 chr8: 72326972-72327030 [+]
cfa-mir-496 chr8: 72332143-72332240 [+]
cfa-mir-377 chr8: 72333670-72333738 [+]
cfa-mir-409 chr8: 72336515-72336568 [+]
cfa-mir-369 chr8: 72336806-72336861 [+]

Mature sequence cfa-miR-485

Accession MIMAT0006725
Sequence

1 -  

agaggcuggccgugaugaauucg

 - 23

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Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).