Stem-loop sequence cfa-mir-487b

Accession MI0008144
Previous IDs cfa-mir-487
Description Canis familiaris miR-487b stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
--    uuau      c u     uuuua 
  gugg    cccugu c guucg     c
  ||||    |||||| | |||||      
  cacc    gggaca g uaagc     u
uu    uacu      u c     uguac
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Genome context
Coordinates (CanFam2) Overlapping transcripts
chr8: 72318229-72318286 [+]
sense
antisense
Clustered miRNAs
< 10kb from cfa-mir-487b
cfa-mir-376a-3 chr8: 72312485-72312543 [+]
cfa-mir-376c chr8: 72312833-72312918 [+]
cfa-mir-376a-2 chr8: 72313232-72313289 [+]
cfa-mir-376b chr8: 72313591-72313689 [+]
cfa-mir-376a-1 chr8: 72313992-72314049 [+]
cfa-mir-300 chr8: 72314548-72314625 [+]
cfa-mir-381 chr8: 72317716-72317790 [+]
cfa-mir-487b chr8: 72318229-72318286 [+]
cfa-mir-539 chr8: 72319044-72319119 [+]
cfa-mir-544 chr8: 72320389-72320477 [+]
cfa-mir-487a chr8: 72323811-72323890 [+]
cfa-mir-382 chr8: 72325856-72325912 [+]
cfa-mir-134 chr8: 72326229-72326301 [+]
cfa-mir-485 chr8: 72326972-72327030 [+]

Mature sequence cfa-miR-487b

Accession MIMAT0006723
Previous IDs cfa-miR-487
Sequence

37 -  

aaucguacagggucauccacuu

 - 58

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Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).