Stem-loop sequence cfa-mir-543

Accession MI0008139
Description Canis familiaris miR-543 stem-loop
Gene family MIPF0000110; mir-329
Stem-loop 
--     u  -     ---u    u    uu 
  gaagu gc ccgug    uuuu ucgc  u
  ||||| || |||||    |||| ||||  a
  cuuca cg ggcgc    aaag agug  u
uu     -  u     uuac    c    uu
Get sequence
Genome context
Coordinates (CanFam2) Overlapping transcripts
chr8: 72306139-72306196 [+]
sense
Clustered miRNAs
< 10kb from cfa-mir-543
cfa-mir-379 chr8: 72296541-72296599 [+]
cfa-mir-411 chr8: 72297827-72297884 [+]
cfa-mir-299 chr8: 72298281-72298343 [+]
cfa-mir-380 chr8: 72299497-72299553 [+]
cfa-mir-323 chr8: 72300227-72300282 [+]
cfa-mir-758 chr8: 72300515-72300595 [+]
cfa-mir-329b chr8: 72301261-72301340 [+]
cfa-mir-329a chr8: 72301588-72301647 [+]
cfa-mir-494 chr8: 72304118-72304198 [+]
cfa-mir-543 chr8: 72306139-72306196 [+]
cfa-mir-495 chr8: 72307902-72307959 [+]
cfa-mir-376a-3 chr8: 72312485-72312543 [+]
cfa-mir-376c chr8: 72312833-72312918 [+]
cfa-mir-376a-2 chr8: 72313232-72313289 [+]
cfa-mir-376b chr8: 72313591-72313689 [+]
cfa-mir-376a-1 chr8: 72313992-72314049 [+]
cfa-mir-300 chr8: 72314548-72314625 [+]

Mature sequence cfa-miR-543

Accession MIMAT0006720
Sequence

37 -  

aaacauucgcggugcacuucuu

 - 58

Get sequence
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).