Stem-loop sequence cfa-mir-379

Accession MI0008134
Description Canis familiaris miR-379 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
--    a       ga       - uuugu 
  uggu gacuaug  acguagg c     g
  |||| |||||||  ||||||| |      
  auca cugguac  uguaucc g     a
ca    c       aa       a uuuuu
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Genome context
Coordinates (CanFam2) Overlapping transcripts
chr8: 72296541-72296599 [+]
sense
Clustered miRNAs
< 10kb from cfa-mir-379
cfa-mir-379 chr8: 72296541-72296599 [+]
cfa-mir-411 chr8: 72297827-72297884 [+]
cfa-mir-299 chr8: 72298281-72298343 [+]
cfa-mir-380 chr8: 72299497-72299553 [+]
cfa-mir-323 chr8: 72300227-72300282 [+]
cfa-mir-758 chr8: 72300515-72300595 [+]
cfa-mir-329b chr8: 72301261-72301340 [+]
cfa-mir-329a chr8: 72301588-72301647 [+]
cfa-mir-494 chr8: 72304118-72304198 [+]
cfa-mir-543 chr8: 72306139-72306196 [+]

Mature sequence cfa-miR-379

Accession MIMAT0006715
Sequence

1 -  

ugguagacuauggaacguagg

 - 21

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Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:18392026 "Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).