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Stem-loop sequence MI0008024

Accession MI0008024
ID cfa-mir-30c-1
Description Canis familiaris miR-30c-1 stem-loop
Stem-loop 
--u       u   aca         ---g  a 
   guaaaca ccu   cucucagcu    ug g
   ||||||| |||   |||||||||    ||  
   cauuugu ggg   gagggucgg    ac c
ccu       u   --a         ugga  u
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Genome context
Coordinates (CanFam2.0) Overlapping transcripts
15: 5283932-5283992 [-]
sense
ENSCAFT00000004517 ; XM_843363.1; intron 4
ENSCAFT00000004518 ; XM_843363.1; intron 5
Clustered miRNAs
< 10kb from cfa-mir-30c-1
cfa-mir-30e 15: 5287188-5287251 [-]
cfa-mir-30c-1 15: 5283932-5283992 [-]
Gene family

MIPF0000005; mir-30

Mature sequence MIMAT0006605

Accession MIMAT0006605
ID cfa-miR-30c
Sequence

1 -  

uguaaacauccuacacucucagcu

 - 24

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Evidence experimental; Solexa [1]
Predicted targets

References

1
"Discovering microRNAs from deep sequencing data using miRDeep" Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Nat Biotechnol. 26:407-415(2008).