Stem-loop sequence cel-mir-1824

Accession

MI0007986 (change log)

Description

Caenorhabditis elegans miR-1824 stem-loop

Literature search

1 open access papers mention cel-mir-1824
(2 sentences)

Stem-loop

   g   --       u   c       cu  - --     --      uac 
5'  uuc  accagag ugg aguguuu  cc c  ccaac  uuuugu   a
    |||  ||||||| ||| |||||||  || |  |||||  ||||||   g
3'  aag  uggucuc gcc ucacaag  gg g  gguug  aaaacg   a
   g   uu       c   u       -u  u cc     ua      uua 

Deep sequencing

119 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence was erroneously named mir-809 in [1].

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrI: 13513955-13514047 [+]
• Overlapping transcripts:

  antisense

  Y87G2A.18 ; Y87G2A.18; intron 2

Database links

• RNAcentral:URS00003C7E57_6239
• miRBase Tracker:MI0007986

Mature sequence cel-miR-1824-5p

• Accession: MIMAT0006591
• Previous IDs: cel-miR-1824
• Sequence: 13 - uggcaguguuucucccccaacuu - 35
• Deep sequencing: 101 reads, 11 experiments
• Evidence: experimental; 454 [1], Illumina [2,4], CLIPseq [3]
• Database links:
  • RNAcentral:URS00002122E9_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-1824
  • microrna.org:cel-miR-1824-5p

Mature sequence cel-miR-1824-3p

• Accession: MIMAT0020360
• Sequence: 57 - guuggccguggugaacacuuccgcc - 81
• Deep sequencing: 14 reads, 2 experiments
• Evidence: experimental; Illumina [4]

References

1. PMID:18042455 "Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2" Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M Mol Cell. 28:598-613(2007).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3. PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
4. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).