Stem-loop sequence cel-mir-1823

Accession

MI0007985 (change log)

Description

Caenorhabditis elegans miR-1823 stem-loop

Literature search

1 open access papers mention cel-mir-1823
(1 sentences)

Stem-loop

   c      --    a   c  c     c -  a g        --g a 
5'  uuugac  cuga cgu ac ccuaa c cu u caguauuu   g g
    ||||||  |||| ||| || ||||| | || | ||||||||   |  
3'  agacug  gacu gua ug ggauu g ga a gucauaaa   c c
   a      uu    c   a  a     u u  - g        aua u 

Deep sequencing

3788 reads, 7.69 reads per million, 13 experiments

Confidence

Annotation confidence: high

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Comments

This sequence was erroneously named mir-808 in [1].

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrI: 12608619-12608708 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000022B2BE_6239
• miRBase Tracker:MI0007985

Mature sequence cel-miR-1823-5p

• Accession: MIMAT0032035
• Sequence: 17 - accccuaacccuaugcaguauuu - 39
• Deep sequencing: 44 reads, 10 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000764E54_6239

Mature sequence cel-miR-1823-3p

• Accession: MIMAT0006590
• Previous IDs: cel-miR-1823
• Sequence: 53 - uacuggaaguguuuaggaguaa - 74
• Deep sequencing: 3741 reads, 13 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS000060F897_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-1823
  • microrna.org:cel-miR-1823-3p

References

1. PMID:18042455 "Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2" Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M Mol Cell. 28:598-613(2007).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).