Stem-loop sequence vvi-MIR399f

Accession MI0007962
Description Vitis vinifera miR399f stem-loop
Gene family MIPF0000015; MIR399
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-399_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

mir-399 is a microRNA that was identified in both Arabidopsis thaliana and Oryza sativa computationally and was later experimentally verified. mir-399 is thought to target mRNAs coding for a phosphate transporter. The mature sequence is excised from the 3' arm of the hairpin. There are multiple copies of MIR399 in each plant genome, for example A. thaliana contains six microRNA precursors that all give rise to an almost identical mature miR-399 sequence.

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Stem-loop
-------      uuaga    c      g        ---u    ccc   ua      ucg 
       guugca     gggc aaaucu cuuuggca    gaag   auu  gcaggc   u
       ||||||     |||| |||||| ||||||||    ||||   |||  ||||||    
       uaacgu     ccug uuuaga gaagccgu    cuuc   uga  cgucug   c
gucuucu      -----    -      g        cgcu    ---   --      ugu 
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Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chr10: 2995807-2995913 [-]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR399f
vvi-MIR399f chr10: 2995807-2995913 [-]
vvi-MIR399e chr10: 2992220-2992331 [-]
vvi-MIR399a chr10: 2989450-2989546 [+]
vvi-MIR399d chr10: 2988021-2988125 [-]
Database links

Mature sequence vvi-miR399f

Accession MIMAT0006567
Sequence

76 - 

ugccgaaggagauuuguccug

 - 96

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Evidence by similarity; MI0001020

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).