Stem-loop sequence mml-mir-27b

AccessionMI0007595
DescriptionMacaca mulatta miR-27b stem-loop
Gene family MIPF0000036; mir-27
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled miR-27. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

miR-27 is a family of microRNA precursors found in animals, including humans. MicroRNAs are typically transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. The excised region or, mature product, of the miR-27 precursor is the microRNA mir-27. Herpesvirus saimiri expresses several non-coding RNAs (HSURs) which have been found to significantly reduce the level of mir-27 in a host cell. It has been proposed that miR-27 operates together with miR-23 and mir-24 in a co-operative cluster.

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Stem-loop
-    -    aaca                  auug        ugau     
 accu cucu    aggugcagagcuuagcug    gugaacag    uggu 
 |||| ||||    ||||||||||||||||||    ||||||||    ||| u
 ugga gaga    uccacgucuugaaucggu    cacuuguu    gccu 
g    a    --ag                  --ga        --uc     
Get sequence
Deep sequencing
691691 reads, 1.22e+04 reads per million, 8 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (CR_1.0) Overlapping transcripts
chr15: 108888097-108888193 [+]
intergenic
Clustered miRNAs
< 10kb from mml-mir-27b
mml-mir-23bchr15: 108887860-108887956 [+]
mml-mir-27bchr15: 108888097-108888193 [+]
mml-mir-24-1chr15: 108888669-108888736 [+]
Database links

Mature sequence mml-miR-27b-5p

Accession MIMAT0026802
Sequence

19 - 

agagcuuagcugauuggugaaca

 - 41

Get sequence
Deep sequencing46 reads, 7 experiments
Evidence experimental; Illumina [2]

Mature sequence mml-miR-27b-3p

Accession MIMAT0006167
Sequence

61 - 

uucacaguggcuaaguucugc

 - 81

Get sequence
Deep sequencing2095 reads, 8 experiments
Evidence experimental; Illumina [2]
Predicted targets

References

1
2
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).