Stem-loop sequence mml-mir-27b

Accession

MI0007595 (change log)

Description

Macaca mulatta miR-27b stem-loop

Gene family

MIPF0000036; mir-27

Stem-loop

   -    -    aaca                  auug        ugau     
5'  accu cucu    aggugcagagcuuagcug    gugaacag    uggu 
    |||| ||||    ||||||||||||||||||    ||||||||    ||| u
3'  ugga gaga    uccacgucuugaaucggu    cacuuguu    gccu 
   g    a    --ag                  --ga        --uc     

Deep sequencing

933799 reads, 5.3e+03 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr15: 108904304-108904400 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-27b

• mml-mir-23b: chr15: 108904067-108904163 [+]
• mml-mir-27b: chr15: 108904304-108904400 [+]
• mml-mir-24-1: chr15: 108904876-108904943 [+]

Database links

• EntrezGene:MIR27B
• RNAcentral:URS000075B0A5_9544
• miRBase Tracker:MI0007595

Mature sequence mml-miR-27b-5p

• Accession: MIMAT0026802
• Sequence: 19 - agagcuuagcugauuggugaaca - 41
• Deep sequencing: 10705 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000075EA7B_9544
• Predicted targets:
  • TargetScanVert:mml-miR-27b-5p

Mature sequence mml-miR-27b-3p

• Accession: MIMAT0006167
• Sequence: 61 - uucacaguggcuaaguucugc - 81
• Deep sequencing: 923073 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000059311D_9544
• Predicted targets:
  • TargetScanVert:mml-miR-27b-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).