Stem-loop sequence mml-let-7f-1

Accession MI0007577
Description Macaca mulatta let-7f-1 stem-loop
Gene family MIPF0000002; let-7
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled let-7_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The Let-7 microRNA precursor was identified from a study of developmental timing in C. elegans, and was later shown to be part of a much larger class of non-coding RNAs termed microRNAs. miR-98 microRNA precursor from human is a let-7 family member. Let-7 miRNAs have now been predicted or experimentally confirmed in a wide range of species (MIPF0000002). miRNAs are initially transcribed in long transcripts (up to several hundred nucleotides) called primary miRNAs (pri-miRNAs), which are processed in the nucleus by Drosha and Pasha to hairpin structures of about ~70 nucleotide. These precursors (pre-miRNAs) are exported to the cytoplasm by exportin5, where they are subsequently processed by the enzyme Dicer to a ~22 nucleotide mature miRNA. The involvement of Dicer in miRNA processing demonstrates a relationship with the phenomenon of RNA interference.

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Stem-loop
       a ug                      ---------       u 
5' ucag g  agguaguagauuguauaguugu         gggguag g
   |||| |  ||||||||||||||||||||||         ||||||| a
3' aguc c  uccguuaucuaacauaucaaua         ucccauu u
       - cu                      gaggacuug       u 
Get sequence
Deep sequencing
72601 reads, 1.48e+03 reads per million, 8 experiments
Confidence
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Genome context
Coordinates (CR_1.0) Overlapping transcripts
chr15: 107888686-107888772 [+]
intergenic
Clustered miRNAs
< 10kb from mml-let-7f-1
mml-let-7a-1 chr15: 107888296-107888375 [+]
mml-let-7f-1 chr15: 107888686-107888772 [+]
mml-let-7d chr15: 107891161-107891247 [+]
Database links

Mature sequence mml-let-7f-5p

Accession MIMAT0006156
Sequence

7 - 

ugagguaguagauuguauaguu

 - 28

Get sequence
Deep sequencing 2122 reads, 8 experiments
Evidence by similarity; MI0000068
Predicted targets

Mature sequence mml-let-7f-3p

Accession MIMAT0026793
Sequence

63 - 

cuauacaaucuauugccuuccc

 - 84

Get sequence
Evidence experimental; Illumina [2]

References

1
2
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).