Stem-loop sequence gga-mir-458a

Accession MI0007567
Previous IDs gga-mir-458
Description Gallus gallus miR-458 stem-loop
Gene family MIPF0000179; mir-458
Stem-loop 
a   g  cc  -----gg  gu      g       cg      uc        aa    c 
 gca ag  gc       cc  ggugca auggcag  ccauuu  agagcuau  acag g
 ||| ||  ||       ||  |||||| |||||||  ||||||  ||||||||  |||| u
 cgu uc  cg       gg  ucaugu uaccguc  gguaag  ucucgaua  uguu c
-   a  ua  acaaaaa  --      a       au      uu        -c    a
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Genome context
Coordinates (Gallus-gallus-4.0) Overlapping transcripts
chr13: 7575893-7576008 [-]
intergenic
Clustered miRNAs
< 10kb from gga-mir-458a
gga-mir-458b chr13: 7575899-7576000 [+]
gga-mir-458a chr13: 7575893-7576008 [-]
Database links
  • ENTREZGENE: 100316003;MIR458

Mature sequence gga-miR-458a-5p

Accession MIMAT0007745
Previous IDs gga-miR-458*
Sequence

30 -  

agcgccauuuucagagcuaua

 - 50

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Evidence experimental; Solexa [1]
Predicted targets

Mature sequence gga-miR-458a-3p

Accession MIMAT0007746
Previous IDs gga-miR-458
Sequence

66 -  

auagcucuuugaaugguacugc

 - 87

Get sequence
Evidence by similarity; MI0002179
Predicted targets

References

1
PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).
2
PMID:18511220 "Identification of novel chicken microRNAs and analysis of their genomic organization" Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH Gene. 418:34-40(2008).