Stem-loop sequence gma-MIR1517

Accession

MI0007230 (change log)

Description

Glycine max miR1517 stem-loop

Literature search

2 open access papers mention gma-MIR1517
(3 sentences)

Stem-loop

         -ua       c       a   -au                 auugacuaaguuuuuacagucgacauccacuagaguuuuuucgaucgacaucggucaaagcaauuuuuuagccaacaucaaucaaggcuauuuuauagccgauguuggguaggguuuuuuauucgacaucagucagggcuauuuuuuagcc 
5' gcuagg   uuuuuga cgacauu gac   gacuauuuuuagucgac                                                                                                                                                       a
   ||||||   ||||||| ||||||| |||   |||||||||||||||||                                                                                                                                                        
3' ugaucc   aaaagcu gcuguaa cug   cugauaaaaaucgguug                                                                                                                                                       a
         caa       u       -   guu                 caguuggauuuuuuaggaucguccgcaacuguuuuuuuagauagaucauagcugauuuuuuaucgaaccagcuacggcugguuaucuuggaugggcuacagcugacuuuuuguaguaaucaguuacaaccgacuuuuuagagaucagcuuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr14: 43676665-43677061 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0007230

Mature sequence gma-miR1517

• Accession: MIMAT0007376
• Sequence: 364 - agucuuggucaaugucguucgaaa - 387
• Evidence: experimental; 454 [1]

References

1. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).