Stem-loop sequence ptc-MIR1446d

Accession MI0007045
Description Populus trichocarpa miR1446d stem-loop
Gene family MIPF0000459; MIR1446
Stem-loop
     uuc        u     -    a        u u   ---u    c  a 
ccaac   uucugaac cucuc ccuc acugcuac c aga    cuug ca u
|||||   |||||||| ||||| |||| |||||||| | |||    |||| || c
gguug   aggacuug gagag ggag ugacgaug g ucu    gaac gu c
     uaa        -     u    c        u -   uugu    u  c 
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_15: 12329283-12329387 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR1446d
ptc-MIR477c scaffold_15: 12329499-12329608 [-]
ptc-MIR1446d scaffold_15: 12329283-12329387 [-]

Mature sequence ptc-miR1446d

Accession MIMAT0006007
Sequence

9 - 

uucugaacucucucccucaa

 - 28

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Evidence experimental; cloned [1]

References

1
PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).