Stem-loop sequence ptc-MIR171n

Accession MI0007034
Description Populus trichocarpa miR171n stem-loop
Gene family MIPF0000104; MIR171_2
Stem-loop
     ag   u  c           c      u     u  -auuu  au 
gaagc  aca gg gugguauugau cggcuc ucuuc gu     gc  c
|||||  ||| || ||||||||||| |||||| ||||| ||     ||  a
cuucg  ugu uc cacuauaacua gccgag agaag cg     ug  g
     ca   -  u           a      c     u  cuuuu  aa 
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_12: 2201526-2201626 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR171n
ptc-MIR171n scaffold_12: 2201526-2201626 [-]
ptc-MIR171m scaffold_12: 2197358-2197458 [-]

Mature sequence ptc-miR171n

Accession MIMAT0005996
Sequence

70 - 

cgagccgaaucaauaucacu

 - 89

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Evidence experimental; cloned [1]

References

1
PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).