Stem-loop sequence ptc-MIR171m

Accession MI0007033
Description Populus trichocarpa miR171m stem-loop
Gene family MIPF0000104; MIR171_2
Stem-loop
     ag   u  c           c      aucuucuguauuugcauc 
gaagc  aca gg gugguauugau cggcuc                  a
|||||  ||| || ||||||||||| ||||||                   
cuucg  ugu uc cacuauaacua gccgag                  g
     ca   -  u           a      cagaagucgcuucuugaa 
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_12: 2197358-2197458 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR171m
ptc-MIR171n scaffold_12: 2201526-2201626 [-]
ptc-MIR171m scaffold_12: 2197358-2197458 [-]

Mature sequence ptc-miR171m

Accession MIMAT0005995
Sequence

70 - 

cgagccgaaucaauaucacu

 - 89

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Evidence experimental; cloned [1]

References

1
PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).