Stem-loop sequence osa-MIR1439

Accession

MI0007031 (change log)

Description

Oryza sativa miR1439 stem-loop

Gene family

MIPF0000344; MIR818

Literature search

4 open access papers mention osa-MIR1439
(8 sentences)

Stem-loop

      ug uuug        g       ac      c           c         c       cua        --u     cua 
5' uau  u    uuauaaau uaauacu  cuccgu ccaaaauauag cauuuuuag uaugaau   gacauugu   uuuag   u
   |||  |    |||||||| |||||||  |||||| ||||||||||| ||||||||| |||||||   ||||||||   |||||    
3' aua  g    gauguuua auuauga  gaggca gguuuuauauu guaaaaauc auacuua   cuguaaca   agauc   g
      gu uuuu        a       gu      a           c         a       aac        uac     uaa 

Deep sequencing

711 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr12: 10074109-10074280 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0007031

Mature sequence osa-miR1439

• Accession: MIMAT0005993
• Sequence: 132 - uuuuggaacggagugaguauu - 152
• Deep sequencing: 349 reads, 2 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000107853_39947

References

1. PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing" Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK BMC Plant Biol. 8:25(2008).