Stem-loop sequence oan-mir-1421ak

Accession MI0007013
Description Ornithorhynchus anatinus miR-1421ak stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
gc    g    g   -u         ag         gaua 
  gcac gugu agc  ggucacaug  gugcagugu    g
  |||| |||| |||  |||||||||  |||||||||    u
  cgug caca ucg  cuaguguac  uacgucaca    g
-a    g    -   cu         ca         gaag
Get sequence
Genome context
Coordinates (OANA5) Overlapping transcripts
Contig7160: 15306-15387 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421ak
oan-mir-1421am Contig7160: 23160-23223 [-]
oan-mir-1421al Contig7160: 22579-22691 [-]
oan-mir-1421u Contig7160: 21999-22110 [-]
oan-mir-1421n-2 Contig7160: 19257-19349 [-]
oan-mir-1421t Contig7160: 17958-18074 [-]
oan-mir-1421s Contig7160: 17153-17253 [-]
oan-mir-1421p-2 Contig7160: 16442-16565 [-]
oan-mir-1421ak Contig7160: 15306-15387 [-]
oan-mir-1421i-3 Contig7160: 14496-14562 [-]
oan-mir-1421r Contig7160: 13915-14033 [-]
oan-mir-1421q Contig7160: 13103-13216 [-]
oan-mir-1421p-1 Contig7160: 12428-12492 [-]
oan-mir-1421i-2 Contig7160: 11366-11432 [-]
oan-mir-1421o Contig7160: 10811-10906 [-]
oan-mir-1421g-3 Contig7160: 10086-10153 [-]
oan-mir-1421k-2 Contig7160: 9501-9619 [-]
oan-mir-1421l-2 Contig7160: 8702-8788 [-]
oan-mir-1421n-1 Contig7160: 7381-7494 [-]
oan-mir-1421m Contig7160: 5522-5642 [-]
Database links

Mature sequence oan-miR-1421ak-5p

Accession MIMAT0007309
Previous IDs oan-miR-1421ak
Sequence

15 -  

cuggucacaugaggugcagugu

 - 36

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421ak-3p

Accession MIMAT0007310
Previous IDs oan-miR-1421ak*
Sequence

50 -  

acugcauaccaugugaucucgcu

 - 72

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).