Stem-loop sequence oan-mir-1421ab-2

Accession MI0006999
Description Ornithorhynchus anatinus miR-1421ab-2 stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
-  --u   gua      g     a        c    c     ga  gaug 
 gg   gac   cggcac gugug ggagcuca acgu uugca  gu    u
 ||   |||   |||||| ||||| |||||||| |||| |||||  ||    c
 cc   cug   gucgug cacau ccucgagu ugcg aacgu  cg    g
g  uuu   --g      a     g        c    u     ag  aaag
Get sequence
Genome context
Coordinates (OANA5) Overlapping transcripts
X1: 44293810-44293911 [-]
antisense
ENSOANT00000030955 ; F6S1K5_ORNAN; intron 2
Clustered miRNAs
< 10kb from oan-mir-1421ab-2
oan-mir-1421ag-2 X1: 44303617-44303684 [-]
oan-mir-1421y-3 X1: 44303056-44303140 [-]
oan-mir-1421ai X1: 44301501-44301574 [-]
oan-mir-1421ab-1 X1: 44298540-44298604 [-]
oan-mir-1419d X1: 44298117-44298229 [-]
oan-mir-1419c-2 X1: 44296776-44296886 [-]
oan-mir-1421ag-1 X1: 44295490-44295574 [-]
oan-mir-1421y-2 X1: 44294920-44295029 [-]
oan-mir-1421ab-2 X1: 44293810-44293911 [-]
oan-mir-1421aa X1: 44291691-44291783 [-]
oan-mir-1419c-1 X1: 44291006-44291114 [-]
oan-mir-1421z X1: 44289986-44290072 [-]
oan-mir-1419b-2 X1: 44286185-44286299 [-]
oan-mir-1421y-1 X1: 44284866-44284978 [-]
oan-mir-1421x X1: 44284340-44284425 [-]
Database links

Mature sequence oan-miR-1421ab-5p

Accession MIMAT0007251
Previous IDs oan-miR-1421ab
Sequence

22 -  

aggagcucacacgucuugcaga

 - 43

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421ab-2-3p

Accession MIMAT0007300
Previous IDs oan-miR-1421ab-2*
Sequence

61 -  

ugcaaugcgucugagcuccgu

 - 81

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).