Stem-loop sequence mdv1-mir-M10

Accession MI0006988
Description Mareks disease virus miR-M10 stem-loop
Gene family MIPF0000526; mir-M7
Stem-loop 
--uggc                cca  ucucu  u 
      guugucucguagaggu   ga     cc g
      ||||||||||||||||   ||     ||  
      caauagagcaucucua   cu     gg u
guuuga                aag  -caac  u
Get sequence
Genome context
Coordinates (EMBL:AF243438.1) Overlapping transcripts
AF243438.1: 142625-142693 [+]
intergenic
AF243438.1: 175751-175819 [-]
intergenic
Clustered miRNAs
< 10kb from mdv1-mir-M10
mdv1-mir-M1 AF243438.1: 4681-4756 [-]
mdv1-mir-M31 AF243438.1: 5013-5081 [-]
mdv1-mir-M11 AF243438.1: 5506-5570 [-]
mdv1-mir-M4 AF243438.1: 7192-7257 [-]
mdv1-mir-M2 AF243438.1: 7324-7397 [-]
mdv1-mir-M3 AF243438.1: 7476-7545 [-]
mdv1-mir-M12 AF243438.1: 7671-7732 [-]
mdv1-mir-M5 AF243438.1: 7945-8019 [-]
mdv1-mir-M9 AF243438.1: 8182-8251 [-]
mdv1-mir-M9 AF243438.1: 133369-133438 [+]
mdv1-mir-M5 AF243438.1: 133601-133675 [+]
mdv1-mir-M12 AF243438.1: 133888-133949 [+]
mdv1-mir-M3 AF243438.1: 134075-134144 [+]
mdv1-mir-M2 AF243438.1: 134223-134296 [+]
mdv1-mir-M4 AF243438.1: 134363-134428 [+]
mdv1-mir-M11 AF243438.1: 136050-136114 [+]
mdv1-mir-M31 AF243438.1: 136539-136607 [+]
mdv1-mir-M1 AF243438.1: 136864-136939 [+]
mdv1-mir-M6 AF243438.1: 142321-142440 [+]
mdv1-mir-M7 AF243438.1: 142501-142620 [+]
mdv1-mir-M10 AF243438.1: 142625-142693 [+]
mdv1-mir-M10 AF243438.1: 175751-175819 [-]
mdv1-mir-M7 AF243438.1: 175824-175943 [-]

Mature sequence mdv1-miR-M10-5p

Accession MIMAT0007294
Sequence

3 -  

gcguugucucguagagguccag

 - 24

Get sequence
Evidence experimental; cloned [2], Solexa [3]

Mature sequence mdv1-miR-M10-3p

Accession MIMAT0005981
Previous IDs mdv1-miR-M10
Sequence

43 -  

ucgaaaucucuacgagauaaca

 - 64

Get sequence
Evidence experimental; cloned [1-2], Northern [1], Solexa [3]

References

1
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
2
PMID:18430245 "Deep sequencing of chicken microRNAs" Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW BMC Genomics. 9:185(2008).
3
PMID:18842708 "Sequence conservation and differential expression of Marek's disease virus microRNAs" Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J J Virol. 82:12213-12220(2008).