Stem-loop sequence oan-mir-20a-2

Accession

MI0006874 (change log)

Description

Ornithorhynchus anatinus miR-20a-2 stem-loop

Gene family

MIPF0000001; mir-17

Stem-loop

   ---------cugaugacagcuccuguagcacua                 g   -  uu 
5'                                  aagugcuuauagugcag uag ug  u
                                    ||||||||||||||||| ||| ||   
3'                                  uucacgaguauuacguc auc au  a
   gacuuccacuucgagaugucggucguccugaaa                 -   u  ug 

Deep sequencing

44705 reads, 680 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (OANA5): Ultra284: 6728615-6728723 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from oan-mir-20a-2

• oan-mir-17: Ultra284: 6728095-6728179 [+]
• oan-mir-19a: Ultra284: 6728409-6728548 [+]
• oan-mir-20a-2: Ultra284: 6728615-6728723 [+]
• oan-mir-19b-2: Ultra284: 6728772-6728832 [+]
• oan-mir-92a-2: Ultra284: 6728858-6728967 [+]
• oan-mir-17: Ultra284: 6730992-6731076 [+]

Database links

• EntrezGene:MIR20A-2
• miRBase Tracker:MI0006874

Mature sequence oan-miR-20a-5p

• Accession: MIMAT0007145
• Previous IDs: oan-miR-20a
• Sequence: 23 - uaaagugcuuauagugcagg - 42
• Deep sequencing: 80978 reads, 5 experiments
• Evidence: experimental; Illumina [1]

Mature sequence oan-miR-20a-2-3p

• Accession: MIMAT0009169
• Previous IDs: oan-miR-20a-2*
• Sequence: 59 - acugcauuaugagcacuuaaagu - 81
• Deep sequencing: 90 reads, 5 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).