Stem-loop sequence oan-mir-1421j

Accession MI0006771
Description Ornithorhynchus anatinus miR-1421j stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
u     c  -accu  --c    g     a uua        a    a      aga 
 uccgg cg     ac   gcac gugug g   gucacgug ggug agugug   g
 ||||| ||     ||   |||| ||||| |   |||||||| |||| ||||||   u
 agguc gc     ug   cgug cacau c   caguguac cuac ucacac   g
g     u  cccuc  uaa    a     c cuc        a    g      aag
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Genome context
Coordinates (OANA5) Overlapping transcripts
Contig22847: 9647-9760 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421j
oan-mir-1421j Contig22847: 9647-9760 [-]
oan-mir-1421i-1 Contig22847: 9450-9510 [-]
oan-mir-1421h Contig22847: 6874-6963 [-]
oan-mir-1421g-1 Contig22847: 6129-6240 [-]
oan-mir-1419g Contig22847: 5741-5822 [-]
oan-mir-1421f Contig22847: 5019-5107 [-]
oan-mir-1421e Contig22847: 3936-4040 [-]
oan-mir-1421d Contig22847: 3447-3563 [-]
oan-mir-1421c Contig22847: 2828-2908 [-]
oan-mir-1419f Contig22847: 2420-2526 [-]
oan-mir-1421b Contig22847: 1681-1759 [-]
oan-mir-1421a Contig22847: 75-167 [-]
Database links

Mature sequence oan-miR-1421j

Accession MIMAT0006981
Sequence

30 -  

uagucacgugaggugaagugug

 - 51

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Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).