Stem-loop sequence oan-mir-1421a

Accession MI0006762
Description Ornithorhynchus anatinus miR-1421a stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
gaucugc     gg   uagc        u c          ggua 
       ggcac  ugu    agguuaca g ggugcaguau    g
       |||||  |||    |||||||| | ||||||||||    u
       ccgug  aca    uccagugu c cuacgucgua    g
--cugua     ag   ugcc        u c          aaag
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Genome context
Coordinates (OANA5) Overlapping transcripts
Contig22847: 75-167 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421a
oan-mir-1421j Contig22847: 9647-9760 [-]
oan-mir-1421i-1 Contig22847: 9450-9510 [-]
oan-mir-1421h Contig22847: 6874-6963 [-]
oan-mir-1421g-1 Contig22847: 6129-6240 [-]
oan-mir-1419g Contig22847: 5741-5822 [-]
oan-mir-1421f Contig22847: 5019-5107 [-]
oan-mir-1421e Contig22847: 3936-4040 [-]
oan-mir-1421d Contig22847: 3447-3563 [-]
oan-mir-1421c Contig22847: 2828-2908 [-]
oan-mir-1419f Contig22847: 2420-2526 [-]
oan-mir-1421b Contig22847: 1681-1759 [-]
oan-mir-1421a Contig22847: 75-167 [-]
Database links

Mature sequence oan-miR-1421a-5p

Accession MIMAT0006963
Previous IDs oan-miR-1421a
Sequence

21 -  

cagguuacaugcggugcaguau

 - 42

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421a-3p

Accession MIMAT0006964
Previous IDs oan-miR-1421a*
Sequence

57 -  

cugcaucccuugugaccuccgu

 - 78

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).