Stem-loop sequence hsa-mir-1197

Accession MI0006656
Symbol HGNC:MIR1197
Description Homo sapiens miR-1197 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
acuuccu      -u     ugc   u       gug g    - uuu 
       gguauu  gaaga   ggu gaccaug   u uacg c   a
       ||||||  |||||   ||| |||||||   | |||| |   u
       cuauaa  cuucu   uca cugguac   g augc g   u
------a      cu     ---   u       aca g    a ugu
Get sequence
Deep sequencing
44 reads, 1 experiments
Comments

Afanasyeva et al. refer to this sequence using the internal identifier MYCNSC_NB5_330 [1]. Some additional sequences reported in [1] do not meet miRBase requirements for miRNA identification.

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 101491901-101491988 [+]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-1197
hsa-mir-379 chr14: 101488403-101488469 [+]
hsa-mir-411 chr14: 101489662-101489757 [+]
hsa-mir-299 chr14: 101490131-101490193 [+]
hsa-mir-380 chr14: 101491354-101491414 [+]
hsa-mir-1197 chr14: 101491901-101491988 [+]
hsa-mir-323a chr14: 101492069-101492154 [+]
hsa-mir-758 chr14: 101492357-101492444 [+]
hsa-mir-329-1 chr14: 101493122-101493201 [+]
hsa-mir-329-2 chr14: 101493437-101493520 [+]
hsa-mir-494 chr14: 101495971-101496051 [+]
hsa-mir-1193 chr14: 101496389-101496466 [+]
hsa-mir-543 chr14: 101498324-101498401 [+]
hsa-mir-495 chr14: 101500092-101500173 [+]
Database links

Mature sequence hsa-miR-1197

Accession MIMAT0005955
Sequence

57 -  

uaggacacauggucuacuucu

 - 77

Get sequence
Deep sequencing 44 reads, 1 experiments
Evidence experimental; cloned [1]
Predicted targets

References

1
PMID:18230126 "New miRNAs cloned from neuroblastoma" Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F BMC Genomics. 9:52(2008).