Stem-loop sequence vvi-MIR169u

Accession MI0006535
Description Vitis vinifera miR169u stem-loop
Gene family MIPF0000037; MIR169_2
Stem-loop 
--     g    u        gau         -uu      uu  a     g ac 
  agggu gaau gagucaag   gacuugccg   auauau  gc gaagg c  g
  ||||| |||| ||||||||   |||||||||   ||||||  || ||||| |  c
  ucccg uuug cucaguuc   uugaacggc   ugugua  cg uuucc g  a
uc     g    u        -ag         cau      -u  a     g gg
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Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chr11: 16409401-16409510 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR169u
vvi-MIR169t chr11: 16399567-16399676 [+]
vvi-MIR169u chr11: 16409401-16409510 [+]
vvi-MIR169r chr11: 16415131-16415239 [+]
Database links

Mature sequence vvi-miR169u

Accession MIMAT0005690
Sequence

11 -  

ugagucaaggaugacuugccg

 - 31

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Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).