Stem-loop sequence vvi-MIR169r

Accession MI0006532
Description Vitis vinifera miR169r stem-loop
Gene family MIPF0000037; MIR169_2
Stem-loop 
--     g             gau         -a       uu  a      aug 
  agggu gaauugagucaag   gacuugccg  uauauau  gc gaaggc   c
  ||||| |||||||||||||   |||||||||  |||||||  || ||||||    
  ucccg uuugacucaguuc   uugaacggc  augugua  cg uuuucg   a
uc     g             -ag         ca       -u  a      ggg
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Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chr11: 16415131-16415239 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR169r
vvi-MIR169u chr11: 16409401-16409510 [+]
vvi-MIR169r chr11: 16415131-16415239 [+]
Database links

Mature sequence vvi-miR169r

Accession MIMAT0005687
Sequence

11 -  

ugagucaaggaugacuugccg

 - 31

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Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).