Stem-loop sequence vvi-MIR167c

Accession MI0006517
Description Vitis vinifera miR167c stem-loop
Gene family MIPF0000023; MIR167_1
Stem-loop 
--  g      u   a       g        caa   c   auac 
  ca uagcag uga gcugcca caugaucu   cuu ccu    a
  || |||||| ||| ||||||| ||||||||   ||| |||     
  gu guuguc acu cgauggu guacuaga   gaa gga    a
gg  a      c   c       -        cua   a   acug
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Genome context
Coordinates (Genoscope-20100122) Overlapping transcripts
chrUn: 7495686-7495776 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR167c
vvi-MIR167d chrUn: 7490493-7490607 [+]
vvi-MIR167c chrUn: 7495686-7495776 [+]
Database links

Mature sequence vvi-miR167c

Accession MIMAT0005672
Sequence

11 -  

ugaagcugccagcaugaucuc

 - 31

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Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).