Stem-loop sequence vvi-MIR166b

AccessionMI0006508 (change log)
DescriptionVitis vinifera miR166b stem-loop
Gene family MIPF0000004; MIR166
Literature search

8 open access papers mention vvi-MIR166b
(18 sentences)

Stem-loop
   -  -uu             uu g    cu   g  a     auaagaag 
5'  gu   uuugaggggaaug  g cugg  cga gc uucac        a
    ||   |||||||||||||  | ||||  ||| || |||||        a
3'  ca   aaacucuccuuac  c gacc  gcu ug aagug        g
   a  uau             uu g    ag   g  g     aauauaua 
Get sequence
Deep sequencing
2425273 reads, 1.62e+05 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr12: 17937398-17937496 [+]
intergenic
Database links

Mature sequence vvi-miR166b

Accession MIMAT0005663
Sequence

68 - 

ucggaccaggcuucauucc

 - 86

Get sequence
Deep sequencing2420533 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).