Stem-loop sequence bna-MIR1140

Accession

MI0006482 (change log)

Previous IDs

bna-MIR1140a

Description

Brassica napus miR1140 stem-loop

Gene family

MIPF0001568; MIR1140

Literature search

4 open access papers mention bna-MIR1140
(7 sentences)

Stem-loop

   cuca   uuuua               c                 u      cuuucuaaagucuucaaaauuuagu 
5'     auc     uauggcuccgauugg uuuaggcuguuguggcu ugacuu                         u
       |||     ||||||||||||||| ||||||||||||||||| ||||||                         u
3'     uag     guaccgaggcuaacc aaauccgacaacaccga acugaa                         u
   ---g   ---ug               -                 c      aauuuuuuuaaauugcacuaacacu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (BrassicaDB-20080411): EM:AC189528: 128989-129138 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006482

Mature sequence bna-miR1140

• Accession: MIMAT0005637
• Previous IDs: bna-miR1140a
• Sequence: 120 - acagccuaaaccaaucggagc - 140
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus" Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL FEBS Lett. 581:3848-3856(2007).
2. PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes" Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ Plant Physiol. 158:813-823(2012).