Stem-loop sequence hsa-mir-1252

Accession

MI0006434

Symbol

HGNC:MIR1252

Description

Homo sapiens miR-1252 stem-loop

Gene family

MIPF0000968; mir-1252

Stem-loop

                 a       a   aa 
agaaagaaggaaauuga uucauuu gaa  g
||||||||||||||||| ||||||| |||  a
ucuuuuuuccuuuaauu gaguaaa cuu  g
                 c       c   aa 

Deep sequencing

7 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 79813037-79813101 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000407107 ; SYT1-004; intron 8

  OTTHUMT00000407113 ; SYT1-005; intron 8

  OTTHUMT00000407107 ; SYT1-004; intron 8

  OTTHUMT00000407113 ; SYT1-005; intron 8

  OTTHUMT00000407107 ; SYT1-004; intron 8

  OTTHUMT00000407113 ; SYT1-005; intron 8

  OTTHUMT00000259415 ; SYT1-001; intron 9

  OTTHUMT00000259415 ; SYT1-001; intron 9

  OTTHUMT00000259415 ; SYT1-001; intron 9

  OTTHUMT00000259416 ; SYT1-002; intron 10

  OTTHUMT00000259416 ; SYT1-002; intron 10

  OTTHUMT00000259416 ; SYT1-002; intron 10

  ENST00000457153 ; SYT1-004; intron 8

  ENST00000552744 ; SYT1-005; intron 8

  ENST00000457153 ; SYT1-004; intron 8

  ENST00000552744 ; SYT1-005; intron 8

  ENST00000457153 ; SYT1-004; intron 8

  ENST00000552744 ; SYT1-005; intron 8

  ENST00000261205 ; SYT1-001; intron 9

  ENST00000261205 ; SYT1-001; intron 9

  ENST00000261205 ; SYT1-001; intron 9

  ENST00000393240 ; SYT1-002; intron 10

  ENST00000393240 ; SYT1-002; intron 10

  ENST00000393240 ; SYT1-002; intron 10

  antisense

  OTTHUMT00000407118 ; RP1-78O14.1-001; intron 1

  OTTHUMT00000407119 ; RP1-78O14.1-003; intron 1

  OTTHUMT00000407120 ; RP1-78O14.1-002; intron 1

  OTTHUMT00000407118 ; RP1-78O14.1-001; intron 1

  OTTHUMT00000407119 ; RP1-78O14.1-003; intron 1

  OTTHUMT00000407120 ; RP1-78O14.1-002; intron 1

  OTTHUMT00000407118 ; RP1-78O14.1-001; intron 1

  OTTHUMT00000407119 ; RP1-78O14.1-003; intron 1

  OTTHUMT00000407120 ; RP1-78O14.1-002; intron 1

  ENST00000549527 ; RP1-78O14.1-001; intron 1

  ENST00000550268 ; RP1-78O14.1-003; intron 1

  ENST00000553165 ; RP1-78O14.1-002; intron 1

  ENST00000549527 ; RP1-78O14.1-001; intron 1

  ENST00000550268 ; RP1-78O14.1-003; intron 1

  ENST00000553165 ; RP1-78O14.1-002; intron 1

  ENST00000549527 ; RP1-78O14.1-001; intron 1

  ENST00000550268 ; RP1-78O14.1-003; intron 1

  ENST00000553165 ; RP1-78O14.1-002; intron 1

Database links

• ENTREZGENE: 100302136;MIR1252
• HGNC: 35365;MIR1252

Mature sequence hsa-miR-1252

• Accession: MIMAT0005944
• Sequence: 5 - agaaggaaauugaauucauuua - 26
• Deep sequencing: 4 reads, 2 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1252
  • MICRORNA.ORG:hsa-miR-1252
  • MIRDB:hsa-miR-1252
  • RNA22-HSA:hsa-miR-1252
  • TARGETMINER:hsa-miR-1252
  • TARGETSCAN-VERT:hsa-miR-1252

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).