Stem-loop sequence hsa-mir-1282

Accession

MI0006429

Symbol

HGNC:MIR1282

Description

Homo sapiens miR-1282 stem-loop

Gene family

MIPF0000587; mir-1282

Stem-loop

ccuucu   cg          uc       ----   g   g     cgag   c 
      ucu  uuugccuuuu  ugcuucu    gcu cau aucuc    ucc u
      |||  ||||||||||  |||||||    ||| ||| |||||    |||  
      agg  aaacgggaga  auggagg    cgg gua uagag    ggg g
-----c   aa          cc       guca   g   g     --au   g 

Deep sequencing

8 reads, 7 experiments

Genome context

• Coordinates (GRCh37.p5): chr15: 44085857-44085957 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000133237 ; SERINC4-007; intron 7

  OTTHUMT00000439768 ; RP11-296A16.1-001; intron 7

  OTTHUMT00000439768 ; RP11-296A16.1-001; intron 7

  ENST00000417761 ; SERINC4-007; intron 7

  ENST00000417761 ; RP11-296A16.1-001; intron 7

  ENST00000417761 ; RP11-296A16.1-001; intron 7

  antisense

  OTTHUMT00000133474 ; SERF2-009; intron 1

  OTTHUMT00000133234 ; SERF2-002; intron 2

  OTTHUMT00000133235 ; SERF2-003; intron 2

  OTTHUMT00000133469 ; SERF2-004; exon 2

  OTTHUMT00000133471 ; SERF2-006; intron 2

  OTTHUMT00000133472 ; SERF2-007; intron 2

  OTTHUMT00000133494 ; SERF2-010; intron 2

  OTTHUMT00000315922 ; SERF2-013; intron 2

  OTTHUMT00000315923 ; SERF2-014; intron 2

  OTTHUMT00000315924 ; SERF2-015; intron 2

  OTTHUMT00000335211 ; SERF2-016; intron 2

  OTTHUMT00000133469 ; SERF2-004; exon 2

  OTTHUMT00000315923 ; SERF2-014; intron 2

  OTTHUMT00000315922 ; SERF2-013; intron 2

  OTTHUMT00000335211 ; SERF2-016; intron 2

  OTTHUMT00000133494 ; SERF2-010; intron 2

  OTTHUMT00000315924 ; SERF2-015; intron 2

  OTTHUMT00000133474 ; SERF2-009; 3'UTR (exon 2)

  OTTHUMT00000133469 ; SERF2-004; exon 2

  OTTHUMT00000315923 ; SERF2-014; intron 2

  OTTHUMT00000315922 ; SERF2-013; intron 2

  OTTHUMT00000335211 ; SERF2-016; intron 2

  OTTHUMT00000133494 ; SERF2-010; intron 2

  OTTHUMT00000315924 ; SERF2-015; intron 2

  OTTHUMT00000133474 ; SERF2-009; 3'UTR (exon 2)

  OTTHUMT00000133470 ; SERF2-005; 3'UTR (exon 3)

  OTTHUMT00000332187 ; SERF2-011; 3'UTR (exon 3)

  OTTHUMT00000133234 ; SERF2-002; 3'UTR (exon 3)

  OTTHUMT00000332187 ; SERF2-011; 3'UTR (exon 3)

  OTTHUMT00000133235 ; SERF2-003; 3'UTR (exon 3)

  OTTHUMT00000133470 ; SERF2-005; 3'UTR (exon 3)

  OTTHUMT00000133471 ; SERF2-006; 3'UTR (exon 3)

  OTTHUMT00000133472 ; SERF2-007; 3'UTR (exon 3)

  OTTHUMT00000133234 ; SERF2-002; 3'UTR (exon 3)

  OTTHUMT00000332187 ; SERF2-011; 3'UTR (exon 3)

  OTTHUMT00000133235 ; SERF2-003; 3'UTR (exon 3)

  OTTHUMT00000133470 ; SERF2-005; 3'UTR (exon 3)

  OTTHUMT00000133471 ; SERF2-006; 3'UTR (exon 3)

  OTTHUMT00000133472 ; SERF2-007; 3'UTR (exon 3)

  OTTHUMT00000133233 ; SERF2-001; intron 4

  OTTHUMT00000133233 ; SERF2-001; 3'UTR (exon 5)

  OTTHUMT00000133233 ; SERF2-001; 3'UTR (exon 5)

  ENST00000409614 ; SERF2-009; intron 1

  ENST00000249786 ; SERF2-002; intron 2

  ENST00000486144 ; SERF2-004; exon 2

  ENST00000409646 ; SERF2-014; intron 2

  ENST00000445816 ; SERF2-003; intron 2

  ENST00000409291 ; SERF2-013; intron 2

  ENST00000448830 ; SERF2-010; intron 2

  ENST00000409617 ; SERF2-016; intron 2

  ENST00000402131 ; SERF2-006; intron 2

  ENST00000403425 ; SERF2-007; intron 2

  ENST00000430901 ; SERF2-015; intron 2

  ENST00000486144 ; SERF2-004; exon 2

  ENST00000409646 ; SERF2-014; intron 2

  ENST00000409291 ; SERF2-013; intron 2

  ENST00000409617 ; SERF2-016; intron 2

  ENST00000448830 ; SERF2-010; intron 2

  ENST00000430901 ; SERF2-015; intron 2

  ENST00000409614 ; SERF2-009; 3'UTR (exon 2)

  ENST00000486144 ; SERF2-004; exon 2

  ENST00000409646 ; SERF2-014; intron 2

  ENST00000409291 ; SERF2-013; intron 2

  ENST00000409617 ; SERF2-016; intron 2

  ENST00000448830 ; SERF2-010; intron 2

  ENST00000430901 ; SERF2-015; intron 2

  ENST00000409614 ; SERF2-009; 3'UTR (exon 2)

  ENST00000409960 ; SERF2-011; 3'UTR (exon 3)

  ENST00000339624 ; SERF2-005; 3'UTR (exon 3)

  ENST00000249786 ; SERF2-002; 3'UTR (exon 3)

  ENST00000409960 ; SERF2-011; 3'UTR (exon 3)

  ENST00000445816 ; SERF2-003; 3'UTR (exon 3)

  ENST00000339624 ; SERF2-005; 3'UTR (exon 3)

  ENST00000402131 ; SERF2-006; 3'UTR (exon 3)

  ENST00000403425 ; SERF2-007; 3'UTR (exon 3)

  ENST00000249786 ; SERF2-002; 3'UTR (exon 3)

  ENST00000409960 ; SERF2-011; 3'UTR (exon 3)

  ENST00000445816 ; SERF2-003; 3'UTR (exon 3)

  ENST00000339624 ; SERF2-005; 3'UTR (exon 3)

  ENST00000402131 ; SERF2-006; 3'UTR (exon 3)

  ENST00000403425 ; SERF2-007; 3'UTR (exon 3)

  ENST00000381359 ; SERF2-001; intron 4

  ENST00000381359 ; SERF2-001; 3'UTR (exon 5)

  ENST00000381359 ; SERF2-001; 3'UTR (exon 5)

Database links

• ENTREZGENE: 100302254;MIR1282
• HGNC: 35360;MIR1282

Mature sequence hsa-miR-1282

• Accession: MIMAT0005940
• Sequence: 9 - ucguuugccuuuuucugcuu - 28
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1282
  • MICRORNA.ORG:hsa-miR-1282
  • MIRDB:hsa-miR-1282
  • RNA22-HSA:hsa-miR-1282
  • TARGETMINER:hsa-miR-1282
  • TARGETSCAN-VERT:hsa-miR-1282

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).