Stem-loop sequence hsa-mir-1277

Accession

MI0006419

Symbol

HGNC:MIR1277

Description

Homo sapiens miR-1277 stem-loop

Gene family

MIPF0000316; mir-467

Stem-loop

--   uc     u            g        ug au 
  acc  ccaaa auauauauauau uacguaug  u  a
  |||  ||||| |||||||||||| ||||||||  |   
  ugg  gguuu uauguauauaua augcauau  a  u
uu   gu     u            g        gu aa 

Deep sequencing

262 reads, 22 experiments

Genome context

• Coordinates (GRCh37.p5): chrX: 117520357-117520434 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000058003 ; WDR44-003; intron 1

  OTTHUMT00000058003 ; WDR44-003; intron 1

  OTTHUMT00000058003 ; WDR44-003; intron 1

  OTTHUMT00000058001 ; WDR44-001; intron 2

  OTTHUMT00000058002 ; WDR44-002; intron 2

  OTTHUMT00000058001 ; WDR44-001; intron 2

  OTTHUMT00000058002 ; WDR44-002; intron 2

  OTTHUMT00000058001 ; WDR44-001; intron 2

  OTTHUMT00000058002 ; WDR44-002; intron 2

  ENST00000493448 ; WDR44-003; intron 1

  ENST00000493448 ; WDR44-003; intron 1

  ENST00000493448 ; WDR44-003; intron 1

  ENST00000254029 ; WDR44-001; intron 2

  ENST00000371825 ; WDR44-002; intron 2

  ENST00000371822 ; WDR44-202; intron 2

  ENST00000254029 ; WDR44-001; intron 2

  ENST00000371825 ; WDR44-002; intron 2

  ENST00000371822 ; WDR44-202; intron 2

  ENST00000254029 ; WDR44-001; intron 2

  ENST00000371825 ; WDR44-002; intron 2

  ENST00000371822 ; WDR44-201; intron 2

Database links

• ENTREZGENE: 100302214;MIR1277
• HGNC: 35350;MIR1277

Mature sequence hsa-miR-1277-5p

• Accession: MIMAT0022724
• Sequence: 8 - aaauauauauauauauguacguau - 31
• Deep sequencing: 144 reads, 14 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1277-5p
  • MIRDB:hsa-miR-1277-5p
  • TARGETMINER:hsa-miR-1277-5p

Mature sequence hsa-miR-1277-3p

• Accession: MIMAT0005933
• Previous IDs: hsa-miR-1277
• Sequence: 47 - uacguagauauauauguauuuu - 68
• Deep sequencing: 118 reads, 13 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1277-3p
  • MICRORNA.ORG:hsa-miR-1277-3p
  • MIRDB:hsa-miR-1277-3p
  • RNA22-HSA:hsa-miR-1277-3p
  • TARGETMINER:hsa-miR-1277-3p
  • TARGETSCAN-VERT:hsa-miR-1277

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).