Stem-loop sequence hsa-mir-548h-4

Accession

MI0006414

Symbol

HGNC:MIR548H4

Description

Homo sapiens miR-548h-4 stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

--  ---                       c                cuuu   uac 
  gc   uauuagguuggugcaaaaguaau gcgguuuuugucauua    aau   u
  ||   ||||||||||||||||||||||| ||||||||||||||||    |||    
  cg   auaauccaaccacguuuucauua cgccaaaaacaguaau    uug   u
au  uuc                       a                uacu   cau 

Deep sequencing

92 reads, 18 experiments

Genome context

• Coordinates (GRCh37.p5): chr8: 26906370-26906480 [-]
• Overlapping transcripts:

  intergenic

Database links

• ENTREZGENE: 100302244;MIR548H-4
• HGNC: 35345;MIR548H4

Mature sequence hsa-miR-548h-5p

• Accession: MIMAT0005928
• Previous IDs: hsa-miR-548h
• Sequence: 17 - aaaaguaaucgcgguuuuuguc - 38
• Deep sequencing: 167 reads, 7 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548h-5p
  • MICRORNA.ORG:hsa-miR-548h-5p
  • MIRDB:hsa-miR-548h-5p
  • RNA22-HSA:hsa-miR-548h-5p
  • TARGETMINER:hsa-miR-548h-5p
  • TARGETSCAN-VERT:hsa-miR-548h

Mature sequence hsa-miR-548h-3p

• Accession: MIMAT0022723
• Sequence: 71 - caaaaaccgcaauuacuuuugca - 93
• Deep sequencing: 49 reads, 14 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548h-3p
  • MIRDB:hsa-miR-548h-3p
  • TARGETMINER:hsa-miR-548h-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).