Stem-loop sequence hsa-mir-1254-1

Accession

MI0006388

Previous IDs

hsa-mir-1254

Symbol

HGNC:MIR1254

Description

Homo sapiens miR-1254-1 stem-loop

Gene family

MIPF0000614; mir-1254

Stem-loop

ggu  g      ---gc   -a      aa       cc       -a  ua 
   gg aggauu     uug  gccugg  gcuggag  ugcagug  ac  u
   || ||||||     |||  ||||||  |||||||  |||||||  ||  c
   cu uccuaa     aac  cggauc  cgaccuc  augucac  ug  a
-au  g      aguaa   aa      --       --       cg  uu 

Deep sequencing

308 reads, 23 experiments

Genome context

• Coordinates (GRCh37.p5): chr10: 70519075-70519171 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000396073 ; CCAR1-021; intron 1

  OTTHUMT00000396073 ; CCAR1-021; intron 1

  OTTHUMT00000396073 ; CCAR1-021; intron 1

  OTTHUMT00000048361 ; CCAR1-006; intron 3

  OTTHUMT00000048361 ; CCAR1-006; intron 3

  OTTHUMT00000048361 ; CCAR1-006; intron 3

  OTTHUMT00000396065 ; CCAR1-011; intron 13

  OTTHUMT00000396067 ; CCAR1-013; intron 13

  OTTHUMT00000396068 ; CCAR1-014; intron 13

  OTTHUMT00000396065 ; CCAR1-011; intron 13

  OTTHUMT00000396067 ; CCAR1-013; intron 13

  OTTHUMT00000396068 ; CCAR1-014; intron 13

  OTTHUMT00000396065 ; CCAR1-011; intron 13

  OTTHUMT00000396067 ; CCAR1-013; intron 13

  OTTHUMT00000396068 ; CCAR1-014; intron 13

  OTTHUMT00000396063 ; CCAR1-009; intron 14

  OTTHUMT00000396064 ; CCAR1-010; intron 14

  OTTHUMT00000396066 ; CCAR1-012; intron 14

  OTTHUMT00000396070 ; CCAR1-015; intron 14

  OTTHUMT00000396063 ; CCAR1-009; intron 14

  OTTHUMT00000396064 ; CCAR1-010; intron 14

  OTTHUMT00000396066 ; CCAR1-012; intron 14

  OTTHUMT00000396070 ; CCAR1-015; intron 14

  OTTHUMT00000396063 ; CCAR1-009; intron 14

  OTTHUMT00000396064 ; CCAR1-010; intron 14

  OTTHUMT00000396066 ; CCAR1-012; intron 14

  OTTHUMT00000396070 ; CCAR1-015; intron 14

  OTTHUMT00000048356 ; CCAR1-001; intron 15

  OTTHUMT00000048356 ; CCAR1-001; intron 15

  OTTHUMT00000048356 ; CCAR1-001; intron 15

  ENST00000543706 ; CCAR1-021; intron 1

  ENST00000543706 ; CCAR1-021; intron 1

  ENST00000543706 ; CCAR1-021; intron 1

  ENST00000479143 ; CCAR1-006; intron 3

  ENST00000479143 ; CCAR1-006; intron 3

  ENST00000479143 ; CCAR1-006; intron 3

  ENST00000543229 ; CCAR1-011; intron 13

  ENST00000543225 ; CCAR1-013; intron 13

  ENST00000536012 ; CCAR1-014; intron 13

  ENST00000543229 ; CCAR1-011; intron 13

  ENST00000543225 ; CCAR1-013; intron 13

  ENST00000536012 ; CCAR1-014; intron 13

  ENST00000543229 ; CCAR1-011; intron 13

  ENST00000543225 ; CCAR1-013; intron 13

  ENST00000536012 ; CCAR1-014; intron 13

  ENST00000543719 ; CCAR1-009; intron 14

  ENST00000541012 ; CCAR1-010; intron 14

  ENST00000539539 ; CCAR1-012; intron 14

  ENST00000540210 ; CCAR1-015; intron 14

  ENST00000535016 ; CCAR1-201; intron 14

  ENST00000543719 ; CCAR1-009; intron 14

  ENST00000541012 ; CCAR1-010; intron 14

  ENST00000539539 ; CCAR1-012; intron 14

  ENST00000540210 ; CCAR1-015; intron 14

  ENST00000535016 ; CCAR1-201; intron 14

  ENST00000543719 ; CCAR1-009; intron 14

  ENST00000541012 ; CCAR1-010; intron 14

  ENST00000539539 ; CCAR1-012; intron 14

  ENST00000540210 ; CCAR1-015; intron 14

  ENST00000535016 ; CCAR1-201; intron 14

  ENST00000265872 ; CCAR1-001; intron 15

  ENST00000265872 ; CCAR1-001; intron 15

  ENST00000265872 ; CCAR1-001; intron 15

Database links

• ENTREZGENE: 100302273;MIR1254
• HGNC: 35319;MIR1254

Mature sequence hsa-miR-1254

• Accession: MIMAT0005905
• Sequence: 18 - agccuggaagcuggagccugcagu - 41
• Deep sequencing: 395 reads, 14 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1254
  • MICRORNA.ORG:hsa-miR-1254
  • MIRDB:hsa-miR-1254
  • RNA22-HSA:hsa-miR-1254
  • TARGETMINER:hsa-miR-1254
  • TARGETSCAN-VERT:hsa-miR-1254

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).