Stem-loop sequence hsa-mir-548f-5

Accession

MI0006378

Symbol

HGNC:MIR548F5

Description

Homo sapiens miR-548f-5 stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

--          c            c  gu            u 
  uauuagguug ugcaaaaguaau au  uuuuuuccauug a
  |||||||||| |||||||||||| ||  ||||||||||||  
  auaauccaac auguuuucauua ug  aaaaaggguaau a
cg          c            a  uc            g 

Deep sequencing

24 reads, 9 experiments

Genome context

• Coordinates (GRCh37.p5): chrX: 32659591-32659676 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000056191 ; DMD-010; intron 1

  OTTHUMT00000056191 ; DMD-010; intron 1

  OTTHUMT00000056191 ; DMD-010; intron 1

  OTTHUMT00000056184 ; DMD-003; intron 2

  OTTHUMT00000056185 ; DMD-004; intron 2

  OTTHUMT00000056186 ; DMD-005; intron 2

  OTTHUMT00000056184 ; DMD-003; intron 2

  OTTHUMT00000056185 ; DMD-004; intron 2

  OTTHUMT00000056186 ; DMD-005; intron 2

  OTTHUMT00000056184 ; DMD-003; intron 2

  OTTHUMT00000056185 ; DMD-004; intron 2

  OTTHUMT00000056186 ; DMD-005; intron 2

  OTTHUMT00000056190 ; DMD-009; intron 3

  OTTHUMT00000056190 ; DMD-009; intron 3

  OTTHUMT00000056190 ; DMD-009; intron 3

  OTTHUMT00000056187 ; DMD-006; intron 11

  OTTHUMT00000056182 ; DMD-001; intron 11

  OTTHUMT00000056183 ; DMD-002; intron 11

  OTTHUMT00000056187 ; DMD-006; intron 11

  OTTHUMT00000056182 ; DMD-001; intron 11

  OTTHUMT00000056183 ; DMD-002; intron 11

  OTTHUMT00000056187 ; DMD-006; intron 11

  OTTHUMT00000056182 ; DMD-001; intron 11

  OTTHUMT00000056183 ; DMD-002; intron 11

  ENST00000480751 ; DMD-010; intron 1

  ENST00000480751 ; DMD-010; intron 1

  ENST00000480751 ; DMD-010; intron 1

  ENST00000488902 ; DMD-003; intron 2

  ENST00000420596 ; DMD-004; intron 2

  ENST00000448370 ; DMD-005; intron 2

  ENST00000488902 ; DMD-003; intron 2

  ENST00000420596 ; DMD-004; intron 2

  ENST00000448370 ; DMD-005; intron 2

  ENST00000488902 ; DMD-003; intron 2

  ENST00000420596 ; DMD-004; intron 2

  ENST00000448370 ; DMD-005; intron 2

  ENST00000447523 ; DMD-009; intron 3

  ENST00000447523 ; DMD-009; intron 3

  ENST00000447523 ; DMD-009; intron 3

  ENST00000534884 ; DMD-206; intron 10

  ENST00000534884 ; DMD-206; intron 10

  ENST00000378677 ; DMD-006; intron 11

  ENST00000357033 ; DMD-001; intron 11

  ENST00000288447 ; DMD-002; intron 11

  ENST00000542849 ; DMD-209; intron 11

  ENST00000535280 ; DMD-207; intron 11

  ENST00000378677 ; DMD-006; intron 11

  ENST00000357033 ; DMD-001; intron 11

  ENST00000288447 ; DMD-002; intron 11

  ENST00000542849 ; DMD-209; intron 11

  ENST00000535280 ; DMD-207; intron 11

  ENST00000378677 ; DMD-006; intron 11

  ENST00000357033 ; DMD-001; intron 11

  ENST00000288447 ; DMD-002; intron 11

Database links

• ENTREZGENE: 100302239;MIR548F5
• ENTREZGENE: 100313889;MIR548F5
• HGNC: 35309;MIR548F5

Mature sequence hsa-miR-548f

• Accession: MIMAT0005895
• Sequence: 52 - aaaaacuguaauuacuuuu - 70
• Deep sequencing: 76 reads, 9 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548f
  • MICRORNA.ORG:hsa-miR-548f
  • MIRDB:hsa-miR-548f
  • RNA22-HSA:hsa-miR-548f
  • TARGETMINER:hsa-miR-548f
  • TARGETSCAN-VERT:hsa-miR-548f

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).