Stem-loop sequence hsa-mir-548f-3

Accession

MI0006376

Symbol

HGNC:MIR548F3

Description

Homo sapiens miR-548f-3 stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

--                cc        a           uuu 
  auuagguuggugcaaa  uaauugca uuuuugcaguu   u
  ||||||||||||||||  |||||||| |||||||||||   u
  uaauccaaccacguuu  auuaaugu aaaaacguuaa   a
ca                uc        c           uga 

Deep sequencing

21 reads, 7 experiments

Genome context

• Coordinates (GRCh37.p5): chr5: 109849530-109849616 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000372492 ; TMEM232-005; intron 5

  OTTHUMT00000372492 ; TMEM232-005; intron 5

  OTTHUMT00000372492 ; TMEM232-005; intron 5

  OTTHUMT00000372490 ; TMEM232-003; intron 9

  OTTHUMT00000372490 ; TMEM232-003; intron 9

  OTTHUMT00000372490 ; TMEM232-003; intron 9

  OTTHUMT00000372489 ; TMEM232-002; intron 10

  OTTHUMT00000372489 ; TMEM232-002; intron 10

  OTTHUMT00000372489 ; TMEM232-002; intron 10

  OTTHUMT00000372488 ; TMEM232-001; intron 12

  OTTHUMT00000372488 ; TMEM232-001; intron 12

  OTTHUMT00000372488 ; TMEM232-001; intron 12

  ENST00000508571 ; TMEM232-005; intron 5

  ENST00000508571 ; TMEM232-005; intron 5

  ENST00000508571 ; TMEM232-005; intron 5

  ENST00000512003 ; TMEM232-003; intron 9

  ENST00000512003 ; TMEM232-003; intron 9

  ENST00000512003 ; TMEM232-003; intron 9

  ENST00000515518 ; TMEM232-002; intron 10

  ENST00000515518 ; TMEM232-002; intron 10

  ENST00000515518 ; TMEM232-002; intron 10

  ENST00000429839 ; TMEM232-201; intron 11

  ENST00000429839 ; TMEM232-201; intron 11

  ENST00000429839 ; TMEM232-201; intron 11

  ENST00000455884 ; TMEM232-001; intron 12

  ENST00000455884 ; TMEM232-001; intron 12

  ENST00000455884 ; TMEM232-001; intron 12

Database links

• ENTREZGENE: 100302159;MIR548F3
• ENTREZGENE: 100313883;MIR548F3
• HGNC: 35307;MIR548F3

Mature sequence hsa-miR-548f

• Accession: MIMAT0005895
• Sequence: 54 - aaaaacuguaauuacuuuu - 72
• Deep sequencing: 76 reads, 9 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548f
  • MICRORNA.ORG:hsa-miR-548f
  • MIRDB:hsa-miR-548f
  • RNA22-HSA:hsa-miR-548f
  • TARGETMINER:hsa-miR-548f
  • TARGETSCAN-VERT:hsa-miR-548f

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).