Stem-loop sequence hsa-mir-548f-1

Accession

MI0006374

Symbol

HGNC:MIR548F1

Description

Homo sapiens miR-548f-1 stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

--           g          c          acauuac 
  auuagguuggu caaaaguaau acaguuuuug       u
  ||||||||||| |||||||||| ||||||||||        
  uaauccaacca guuuucauua ugucaaaaac       u
ga           g          a          agaaacu 

Deep sequencing

23 reads, 8 experiments

Genome context

• Coordinates (GRCh37.p5): chr10: 56367634-56367717 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000291337 ; PCDH15-009; intron 1

  OTTHUMT00000291337 ; PCDH15-009; intron 1

  OTTHUMT00000291337 ; PCDH15-009; intron 1

  OTTHUMT00000048121 ; PCDH15-001; intron 2

  OTTHUMT00000048122 ; PCDH15-002; intron 2

  OTTHUMT00000291334 ; PCDH15-006; intron 2

  OTTHUMT00000291335 ; PCDH15-007; intron 2

  OTTHUMT00000291336 ; PCDH15-008; intron 2

  OTTHUMT00000291338 ; PCDH15-011; intron 2

  OTTHUMT00000291339 ; PCDH15-012; intron 2

  OTTHUMT00000291340 ; PCDH15-013; intron 2

  OTTHUMT00000291341 ; PCDH15-014; intron 2

  OTTHUMT00000291342 ; PCDH15-015; intron 2

  OTTHUMT00000291343 ; PCDH15-016; intron 2

  OTTHUMT00000291344 ; PCDH15-017; intron 2

  OTTHUMT00000291345 ; PCDH15-018; intron 2

  OTTHUMT00000328790 ; PCDH15-020; intron 2

  OTTHUMT00000328791 ; PCDH15-021; intron 2

  OTTHUMT00000048121 ; PCDH15-001; intron 2

  OTTHUMT00000048122 ; PCDH15-002; intron 2

  OTTHUMT00000291334 ; PCDH15-006; intron 2

  OTTHUMT00000291335 ; PCDH15-007; intron 2

  OTTHUMT00000291336 ; PCDH15-008; intron 2

  OTTHUMT00000291338 ; PCDH15-011; intron 2

  OTTHUMT00000291339 ; PCDH15-012; intron 2

  OTTHUMT00000291340 ; PCDH15-013; intron 2

  OTTHUMT00000291341 ; PCDH15-014; intron 2

  OTTHUMT00000291342 ; PCDH15-015; intron 2

  OTTHUMT00000291343 ; PCDH15-016; intron 2

  OTTHUMT00000291344 ; PCDH15-017; intron 2

  OTTHUMT00000291345 ; PCDH15-018; intron 2

  OTTHUMT00000328790 ; PCDH15-020; intron 2

  OTTHUMT00000328791 ; PCDH15-021; intron 2

  OTTHUMT00000291336 ; PCDH15-008; intron 2

  OTTHUMT00000291344 ; PCDH15-017; intron 2

  OTTHUMT00000291345 ; PCDH15-018; intron 2

  OTTHUMT00000291334 ; PCDH15-006; intron 2

  OTTHUMT00000291335 ; PCDH15-007; intron 2

  OTTHUMT00000291341 ; PCDH15-014; intron 2

  OTTHUMT00000291342 ; PCDH15-015; intron 2

  OTTHUMT00000291343 ; PCDH15-016; intron 2

  OTTHUMT00000291338 ; PCDH15-011; intron 2

  OTTHUMT00000291340 ; PCDH15-013; intron 2

  OTTHUMT00000048121 ; PCDH15-001; intron 2

  OTTHUMT00000291339 ; PCDH15-012; intron 2

  OTTHUMT00000328790 ; PCDH15-020; intron 2

  OTTHUMT00000328791 ; PCDH15-021; intron 2

  OTTHUMT00000048122 ; PCDH15-002; intron 2

  OTTHUMT00000257080 ; PCDH15-004; intron 4

  OTTHUMT00000257080 ; PCDH15-004; intron 4

  OTTHUMT00000257080 ; PCDH15-004; intron 4

  OTTHUMT00000291346 ; PCDH15-019; intron 5

  OTTHUMT00000291346 ; PCDH15-019; intron 5

  OTTHUMT00000291346 ; PCDH15-019; intron 5

  ENST00000495484 ; PCDH15-009; intron 1

  ENST00000495484 ; PCDH15-009; intron 1

  ENST00000495484 ; PCDH15-009; intron 1

  ENST00000373965 ; PCDH15-008; intron 2

  ENST00000395438 ; PCDH15-017; intron 2

  ENST00000409834 ; PCDH15-018; intron 2

  ENST00000414367 ; PCDH15-006; intron 2

  ENST00000395445 ; PCDH15-007; intron 2

  ENST00000395446 ; PCDH15-014; intron 2

  ENST00000395442 ; PCDH15-015; intron 2

  ENST00000395440 ; PCDH15-016; intron 2

  ENST00000361849 ; PCDH15-011; intron 2

  ENST00000395433 ; PCDH15-013; intron 2

  ENST00000320301 ; PCDH15-001; intron 2

  ENST00000395430 ; PCDH15-012; intron 2

  ENST00000448885 ; PCDH15-020; intron 2

  ENST00000373956 ; PCDH15-021; intron 2

  ENST00000373955 ; PCDH15-002; intron 2

  ENST00000455746 ; PCDH15-205; intron 2

  ENST00000395432 ; PCDH15-201; intron 2

  ENST00000417177 ; PCDH15-203; intron 2

  ENST00000437009 ; PCDH15-204; intron 2

  ENST00000373965 ; PCDH15-008; intron 2

  ENST00000395438 ; PCDH15-017; intron 2

  ENST00000409834 ; PCDH15-018; intron 2

  ENST00000414367 ; PCDH15-006; intron 2

  ENST00000395445 ; PCDH15-007; intron 2

  ENST00000395446 ; PCDH15-014; intron 2

  ENST00000395442 ; PCDH15-015; intron 2

  ENST00000395440 ; PCDH15-016; intron 2

  ENST00000361849 ; PCDH15-011; intron 2

  ENST00000395433 ; PCDH15-013; intron 2

  ENST00000320301 ; PCDH15-001; intron 2

  ENST00000395430 ; PCDH15-012; intron 2

  ENST00000448885 ; PCDH15-020; intron 2

  ENST00000373956 ; PCDH15-021; intron 2

  ENST00000373955 ; PCDH15-002; intron 2

  ENST00000455746 ; PCDH15-205; intron 2

  ENST00000395432 ; PCDH15-201; intron 2

  ENST00000417177 ; PCDH15-203; intron 2

  ENST00000437009 ; PCDH15-204; intron 2

  ENST00000373965 ; PCDH15-008; intron 2

  ENST00000395438 ; PCDH15-017; intron 2

  ENST00000409834 ; PCDH15-018; intron 2

  ENST00000414367 ; PCDH15-006; intron 2

  ENST00000395445 ; PCDH15-007; intron 2

  ENST00000395446 ; PCDH15-014; intron 2

  ENST00000395442 ; PCDH15-015; intron 2

  ENST00000395440 ; PCDH15-016; intron 2

  ENST00000361849 ; PCDH15-011; intron 2

  ENST00000395433 ; PCDH15-013; intron 2

  ENST00000320301 ; PCDH15-001; intron 2

  ENST00000395430 ; PCDH15-012; intron 2

  ENST00000448885 ; PCDH15-020; intron 2

  ENST00000373956 ; PCDH15-021; intron 2

  ENST00000373955 ; PCDH15-002; intron 2

  ENST00000395432 ; PCDH15-201; intron 2

  ENST00000437009 ; PCDH15-203; intron 2

  ENST00000414778 ; PCDH15-202; intron 3

  ENST00000414778 ; PCDH15-202; intron 3

  ENST00000414778 ; PCDH15-202; intron 3

  ENST00000458638 ; PCDH15-004; intron 4

  ENST00000458638 ; PCDH15-004; intron 4

  ENST00000458638 ; PCDH15-004; intron 4

  ENST00000373957 ; PCDH15-019; intron 5

  ENST00000373957 ; PCDH15-019; intron 5

  ENST00000373957 ; PCDH15-019; intron 5

  antisense

  OTTHUMT00000104671 ; RP11-257I14.1-001; intron 3

  OTTHUMT00000104671 ; RP11-257I14.1-001; intron 3

  OTTHUMT00000104671 ; RP11-257I14.1-001; intron 3

  ENST00000422842 ; RP11-257I14.1-001; intron 3

  ENST00000422842 ; RP11-257I14.1-001; intron 3

  ENST00000422842 ; RP11-257I14.1-001; intron 3

Database links

• ENTREZGENE: 100302192;MIR548F1
• ENTREZGENE: 100313826;MIR548F1
• HGNC: 35305;MIR548F1

Mature sequence hsa-miR-548f

• Accession: MIMAT0005895
• Sequence: 51 - aaaaacuguaauuacuuuu - 69
• Deep sequencing: 76 reads, 9 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548f
  • MICRORNA.ORG:hsa-miR-548f
  • MIRDB:hsa-miR-548f
  • RNA22-HSA:hsa-miR-548f
  • TARGETMINER:hsa-miR-548f
  • TARGETSCAN-VERT:hsa-miR-548f

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).