Stem-loop sequence hsa-mir-1294

Accession

MI0006356

Symbol

HGNC:MIR1294

Description

Homo sapiens miR-1294 stem-loop

Gene family

MIPF0000603; mir-1294

Stem-loop

--     aaugugug  aa     gu   u  a g       c                          c  g  u 
  caccu        cc  gaucu  uca uu u aucucac gaguccugugagguuggcauuguugu ug ca u
  |||||        ||  |||||  ||| || | ||||||| |||||||||||||||||||||||||| || || g
  gugga        gg  uuagg  agu aa a uggagug cucaggacacuccaaccgugacaaca au gu u
au     -------a  -a     --   c  - g       a                          u  a  c 

Deep sequencing

28 reads, 11 experiments

Genome context

• Coordinates (GRCh37.p5): chr5: 153726666-153726807 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000374272 ; GALNT10-005; intron 4

  OTTHUMT00000252453 ; GALNT10-001; intron 4

  OTTHUMT00000374250 ; GALNT10-004; intron 4

  OTTHUMT00000374249 ; GALNT10-003; intron 4

  OTTHUMT00000374275 ; GALNT10-008; intron 4

  OTTHUMT00000374272 ; GALNT10-005; intron 4

  OTTHUMT00000252453 ; GALNT10-001; intron 4

  OTTHUMT00000374250 ; GALNT10-004; intron 4

  OTTHUMT00000374249 ; GALNT10-003; intron 4

  OTTHUMT00000374275 ; GALNT10-008; intron 4

  OTTHUMT00000374272 ; GALNT10-005; intron 4

  OTTHUMT00000252453 ; GALNT10-001; intron 4

  OTTHUMT00000374250 ; GALNT10-004; intron 4

  OTTHUMT00000374249 ; GALNT10-003; intron 4

  OTTHUMT00000374275 ; GALNT10-008; intron 4

  OTTHUMT00000374274 ; GALNT10-007; intron 5

  OTTHUMT00000374274 ; GALNT10-007; intron 5

  OTTHUMT00000374274 ; GALNT10-007; intron 5

  ENST00000425427 ; GALNT10-005; intron 4

  ENST00000297107 ; GALNT10-001; intron 4

  ENST00000520647 ; GALNT10-004; intron 4

  ENST00000377661 ; GALNT10-003; intron 4

  ENST00000519571 ; GALNT10-008; intron 4

  ENST00000425427 ; GALNT10-005; intron 4

  ENST00000297107 ; GALNT10-001; intron 4

  ENST00000520647 ; GALNT10-004; intron 4

  ENST00000377661 ; GALNT10-003; intron 4

  ENST00000519571 ; GALNT10-008; intron 4

  ENST00000425427 ; GALNT10-005; intron 4

  ENST00000297107 ; GALNT10-001; intron 4

  ENST00000520647 ; GALNT10-004; intron 4

  ENST00000377661 ; GALNT10-003; intron 4

  ENST00000519571 ; GALNT10-008; intron 4

  ENST00000521781 ; GALNT10-007; intron 5

  ENST00000521781 ; GALNT10-007; intron 5

  ENST00000521781 ; GALNT10-007; intron 5

  antisense

  OTTHUMT00000374278 ; CTB-157D17.1-001; intron 2

  OTTHUMT00000374278 ; CTB-157D17.1-001; intron 2

  OTTHUMT00000374278 ; CTB-157D17.1-001; intron 2

  ENST00000519727 ; CTB-157D17.1-001; intron 2

  ENST00000519727 ; CTB-157D17.1-001; intron 2

  ENST00000519727 ; CTB-157D17.1-001; intron 2

Database links

• ENTREZGENE: 100302181;MIR1294
• HGNC: 35287;MIR1294

Mature sequence hsa-miR-1294

• Accession: MIMAT0005884
• Sequence: 48 - ugugagguuggcauuguugucu - 69
• Deep sequencing: 25 reads, 10 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1294
  • MICRORNA.ORG:hsa-miR-1294
  • MIRDB:hsa-miR-1294
  • RNA22-HSA:hsa-miR-1294
  • TARGETMINER:hsa-miR-1294
  • TARGETSCAN-VERT:hsa-miR-1294

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).