Stem-loop sequence hsa-mir-548j

Accession

MI0006345

Symbol

HGNC:MIR548J

Description

Homo sapiens miR-548j stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

--    agc     -aa    ua                 u     c    g    ac 
  gggc   cagug   uagu  gcuggugcaaaaguaau gcggu uuug uauu  u
  ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
  cuug   gucgc   auca  cgaccacguuuucauua cguca aaac guga  u
ga    --a     aag    uc                 -     a    g    cu 

Deep sequencing

164 reads, 14 experiments

Genome context

• Coordinates (GRCh37.p5): chr22: 26951178-26951289 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000320820 ; TPST2-001; intron 1

  OTTHUMT00000320822 ; TPST2-003; intron 1

  OTTHUMT00000320821 ; TPST2-002; intron 1

  OTTHUMT00000320825 ; TPST2-006; intron 1

  OTTHUMT00000320824 ; TPST2-005; intron 1

  OTTHUMT00000320826 ; TPST2-007; intron 1

  OTTHUMT00000320823 ; TPST2-004; intron 1

  OTTHUMT00000320820 ; TPST2-001; intron 1

  OTTHUMT00000320822 ; TPST2-003; intron 1

  OTTHUMT00000320821 ; TPST2-002; intron 1

  OTTHUMT00000320825 ; TPST2-006; intron 1

  OTTHUMT00000320824 ; TPST2-005; intron 1

  OTTHUMT00000320826 ; TPST2-007; intron 1

  OTTHUMT00000320823 ; TPST2-004; intron 1

  OTTHUMT00000320820 ; TPST2-001; intron 1

  OTTHUMT00000320822 ; TPST2-003; intron 1

  OTTHUMT00000320821 ; TPST2-002; intron 1

  OTTHUMT00000320825 ; TPST2-006; intron 1

  OTTHUMT00000320824 ; TPST2-005; intron 1

  OTTHUMT00000320826 ; TPST2-007; intron 1

  OTTHUMT00000320823 ; TPST2-004; intron 1

  ENST00000338754 ; TPST2-001; intron 1

  ENST00000398110 ; TPST2-003; intron 1

  ENST00000403880 ; TPST2-002; intron 1

  ENST00000442495 ; TPST2-006; intron 1

  ENST00000440953 ; TPST2-005; intron 1

  ENST00000453117 ; TPST2-007; intron 1

  ENST00000450022 ; TPST2-004; intron 1

  ENST00000528868 ; TPST2-201; intron 1

  ENST00000338754 ; TPST2-001; intron 1

  ENST00000398110 ; TPST2-003; intron 1

  ENST00000403880 ; TPST2-002; intron 1

  ENST00000442495 ; TPST2-006; intron 1

  ENST00000440953 ; TPST2-005; intron 1

  ENST00000453117 ; TPST2-007; intron 1

  ENST00000450022 ; TPST2-004; intron 1

  ENST00000528868 ; TPST2-201; intron 1

  ENST00000338754 ; TPST2-001; intron 1

  ENST00000398110 ; TPST2-003; intron 1

  ENST00000403880 ; TPST2-002; intron 1

  ENST00000442495 ; TPST2-006; intron 1

  ENST00000440953 ; TPST2-005; intron 1

  ENST00000453117 ; TPST2-007; intron 1

  ENST00000450022 ; TPST2-004; intron 1

Database links

• ENTREZGENE: 100302262;MIR548J
• HGNC: 35276;MIR548J

Mature sequence hsa-miR-548j

• Accession: MIMAT0005875
• Sequence: 29 - aaaaguaauugcggucuuuggu - 50
• Deep sequencing: 158 reads, 13 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548j
  • MICRORNA.ORG:hsa-miR-548j
  • MIRDB:hsa-miR-548j
  • RNA22-HSA:hsa-miR-548j
  • TARGETMINER:hsa-miR-548j
  • TARGETSCAN-VERT:hsa-miR-548j

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).